From f6755e04c4cfe473f963b9ae5cd77610b2a2ca00 Mon Sep 17 00:00:00 2001
From: Evie Litherland-Smith <evie.litherland-smith@ukaea.uk>
Date: Wed, 30 Nov 2022 14:46:04 +0000
Subject: [PATCH 1/3] Disable treesitter for fortran files

---
 lua/config_plugins/config_treesitter.lua | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lua/config_plugins/config_treesitter.lua b/lua/config_plugins/config_treesitter.lua
index d9a93934..b2811b91 100644
--- a/lua/config_plugins/config_treesitter.lua
+++ b/lua/config_plugins/config_treesitter.lua
@@ -3,6 +3,6 @@ require 'nvim-treesitter.configs'.setup {
     highlight = {
         enable = true,
         additional_vim_regex_highlighting = false,
-        disable = { 'help' },
+        disable = { 'help', 'fortran' },
     },
 }

From 40a4928ccdd84f274ae8b30291a4ac7afa04498f Mon Sep 17 00:00:00 2001
From: Evie Litherland-Smith <evie.litherland-smith@ukaea.uk>
Date: Wed, 30 Nov 2022 14:46:27 +0000
Subject: [PATCH 2/3] Add additional backends for aerial, enable global mode

---
 lua/config_plugins/config_aerial.lua | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/lua/config_plugins/config_aerial.lua b/lua/config_plugins/config_aerial.lua
index d70a919d..818eb3cd 100644
--- a/lua/config_plugins/config_aerial.lua
+++ b/lua/config_plugins/config_aerial.lua
@@ -1,4 +1,11 @@
 require('aerial').setup {
+    backends = { "treesitter", "lsp", "markdown", "man" },
+    layout = {
+        default_direction = "right", -- "float",
+        placement = "edge",
+    },
+    attach_mode = "global",
+    lazy_load = false,
     on_attach = function(bufnr)
         -- Toggle the aerial window with <leader>a
         vim.api.nvim_buf_set_keymap(bufnr, 'n', '<leader>k', '<cmd>AerialToggle!<CR>', {})
@@ -9,4 +16,5 @@ require('aerial').setup {
         vim.api.nvim_buf_set_keymap(bufnr, 'n', '[[', '<cmd>AerialPrevUp<CR>', {})
         vim.api.nvim_buf_set_keymap(bufnr, 'n', ']]', '<cmd>AerialNextUp<CR>', {})
     end,
+    open_automatic = true,
 }

From 0f77a6c4e5e36cf97d8ce559215790b1abfc57f1 Mon Sep 17 00:00:00 2001
From: Evie Litherland-Smith <evie.litherland-smith@ukaea.uk>
Date: Wed, 30 Nov 2022 14:51:08 +0000
Subject: [PATCH 3/3] Add extra options for nvim-tree

---
 lua/config_plugins/config_nvim-tree.lua | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/lua/config_plugins/config_nvim-tree.lua b/lua/config_plugins/config_nvim-tree.lua
index 39d8ae61..a0c0851b 100644
--- a/lua/config_plugins/config_nvim-tree.lua
+++ b/lua/config_plugins/config_nvim-tree.lua
@@ -1,6 +1,17 @@
-vim.g.loaded = 1
+vim.g.loaded_netrw = 1
 vim.g.loaded_netrwPlugin = 1
 require('nvim-tree').setup {
+    open_on_setup=true,
+    open_on_setup_file=true,
+    hijack_cursor=true,
+    sync_root_with_cwd=true,
+    update_focused_file = {
+        enable = true,
+    },
+    diagnostics = {
+        enable = true,
+        show_on_dirs = true,
+    },
     filters = { custom = { "^.git$" } },
     renderer = {
         group_empty = true,