Add additional config files and templates from old dotfiles

config/i3/config

@@ -0,0 +1,188 @@
+# This file has been auto-generated by i3-config-wizard(1).
+# It will not be overwritten, so edit it as you like.
+#
+# Should you change your keyboard layout some time, delete
+# this file and re-run i3-config-wizard(1).
+#
+
+# i3 config file (v4)
+#
+# Please see https://i3wm.org/docs/userguide.html for a complete reference!
+
+set $mod Mod1
+
+# Font for window titles. Will also be used by the bar unless a different font
+# is used in the bar {} block below.
+# font pango:monospace 12
+font pango:FiraCode 12
+
+# This font is widely installed, provides lots of unicode glyphs, right-to-left
+# text rendering and scalability on retina/hidpi displays (thanks to pango).
+#font pango:DejaVu Sans Mono 8
+
+# The combination of xss-lock, nm-applet and pactl is a popular choice, so
+# they are included here as an example. Modify as you see fit.
+
+# xss-lock grabs a logind suspend inhibit lock and will use i3lock to lock the
+# screen before suspend. Use loginctl lock-session to lock your screen.
+exec --no-startup-id xss-lock --transfer-sleep-lock -- i3lock --nofork
+
+# NetworkManager is the most popular way to manage wireless networks on Linux,
+# and nm-applet is a desktop environment-independent system tray GUI for it.
+exec --no-startup-id nm-applet
+
+# Use pactl to adjust volume in PulseAudio.
+set $refresh_i3status killall -SIGUSR1 i3status
+bindsym XF86AudioRaiseVolume exec --no-startup-id pactl set-sink-volume @DEFAULT_SINK@ +10% && $refresh_i3status
+bindsym XF86AudioLowerVolume exec --no-startup-id pactl set-sink-volume @DEFAULT_SINK@ -10% && $refresh_i3status
+bindsym XF86AudioMute exec --no-startup-id pactl set-sink-mute @DEFAULT_SINK@ toggle && $refresh_i3status
+bindsym XF86AudioMicMute exec --no-startup-id pactl set-source-mute @DEFAULT_SOURCE@ toggle && $refresh_i3status
+
+# Use Mouse+$mod to drag floating windows to their wanted position
+floating_modifier $mod
+
+# start a terminal
+bindsym $mod+Return exec i3-sensible-terminal
+
+# kill focused window
+bindsym $mod+Shift+q kill
+
+# start dmenu (a program launcher)
+bindsym $mod+d exec dmenu_run
+# There also is the (new) i3-dmenu-desktop which only displays applications
+# shipping a .desktop file. It is a wrapper around dmenu, so you need that
+# installed.
+bindsym $mod+Shift+d exec --no-startup-id i3-dmenu-desktop
+
+# bind i3lock to win+l for familiarity
+bindsym Mod4+l exec i3lock -eft -c 282c34
+
+# change focus
+bindsym $mod+j focus left
+bindsym $mod+k focus down
+bindsym $mod+l focus up
+bindsym $mod+semicolon focus right
+
+# alternatively, you can use the cursor keys:
+bindsym $mod+Left focus left
+bindsym $mod+Down focus down
+bindsym $mod+Up focus up
+bindsym $mod+Right focus right
+
+# move focused window
+bindsym $mod+Shift+j move left
+bindsym $mod+Shift+k move down
+bindsym $mod+Shift+l move up
+bindsym $mod+Shift+semicolon move right
+
+# alternatively, you can use the cursor keys:
+bindsym $mod+Shift+Left move left
+bindsym $mod+Shift+Down move down
+bindsym $mod+Shift+Up move up
+bindsym $mod+Shift+Right move right
+
+# split in horizontal orientation
+bindsym $mod+h split h
+
+# split in vertical orientation
+bindsym $mod+v split v
+
+# enter fullscreen mode for the focused container
+bindsym $mod+f fullscreen toggle
+
+# change container layout (stacked, tabbed, toggle split)
+bindsym $mod+s layout stacking
+bindsym $mod+w layout tabbed
+bindsym $mod+e layout toggle split
+
+# toggle tiling / floating
+bindsym $mod+Shift+space floating toggle
+
+# change focus between tiling / floating windows
+bindsym $mod+space focus mode_toggle
+
+# focus the parent container
+bindsym $mod+a focus parent
+
+# focus the child container
+#bindsym $mod+d focus child
+
+# Define names for default workspaces for which we configure key bindings later on.
+# We use variables to avoid repeating the names in multiple places.
+set $ws1 "1"
+set $ws2 "2"
+set $ws3 "3"
+set $ws4 "4"
+set $ws5 "5"
+set $ws6 "6"
+set $ws7 "7"
+set $ws8 "8"
+set $ws9 "9"
+set $ws10 "10"
+
+# switch to workspace
+bindsym $mod+1 workspace number $ws1
+bindsym $mod+2 workspace number $ws2
+bindsym $mod+3 workspace number $ws3
+bindsym $mod+4 workspace number $ws4
+bindsym $mod+5 workspace number $ws5
+bindsym $mod+6 workspace number $ws6
+bindsym $mod+7 workspace number $ws7
+bindsym $mod+8 workspace number $ws8
+bindsym $mod+9 workspace number $ws9
+bindsym $mod+0 workspace number $ws10
+
+# move focused container to workspace
+bindsym $mod+Shift+1 move container to workspace number $ws1
+bindsym $mod+Shift+2 move container to workspace number $ws2
+bindsym $mod+Shift+3 move container to workspace number $ws3
+bindsym $mod+Shift+4 move container to workspace number $ws4
+bindsym $mod+Shift+5 move container to workspace number $ws5
+bindsym $mod+Shift+6 move container to workspace number $ws6
+bindsym $mod+Shift+7 move container to workspace number $ws7
+bindsym $mod+Shift+8 move container to workspace number $ws8
+bindsym $mod+Shift+9 move container to workspace number $ws9
+bindsym $mod+Shift+0 move container to workspace number $ws10
+
+# reload the configuration file
+bindsym $mod+Shift+c reload
+# restart i3 inplace (preserves your layout/session, can be used to upgrade i3)
+bindsym $mod+Shift+r restart
+# exit i3 (logs you out of your X session)
+bindsym $mod+Shift+e exec "i3-nagbar -t warning -m 'You pressed the exit shortcut. Do you really want to exit i3? This will end your X session.' -B 'Yes, exit i3' 'i3-msg exit'"
+
+# resize window (you can also use the mouse for that)
+mode "resize" {
+        # These bindings trigger as soon as you enter the resize mode
+
+        # Pressing left will shrink the window’s width.
+        # Pressing right will grow the window’s width.
+        # Pressing up will shrink the window’s height.
+        # Pressing down will grow the window’s height.
+        bindsym j resize shrink width 10 px or 10 ppt
+        bindsym k resize grow height 10 px or 10 ppt
+        bindsym l resize shrink height 10 px or 10 ppt
+        bindsym semicolon resize grow width 10 px or 10 ppt
+
+        # same bindings, but for the arrow keys
+        bindsym Left resize shrink width 10 px or 10 ppt
+        bindsym Down resize grow height 10 px or 10 ppt
+        bindsym Up resize shrink height 10 px or 10 ppt
+        bindsym Right resize grow width 10 px or 10 ppt
+
+        # back to normal: Enter or Escape or $mod+r
+        bindsym Return mode "default"
+        bindsym Escape mode "default"
+        bindsym $mod+r mode "default"
+}
+
+bindsym $mod+r mode "resize"
+
+# Start i3bar to display a workspace bar (plus the system information i3status
+# finds out, if available)
+bar {
+        tray_output primary
+        status_command i3status
+}
+
+hide_edge_borders smart

config/kitty/kitty_onedark_.conf

@@ -0,0 +1,40 @@
+  # onedark colors for Kitty
+  
+  background #282c34
+  foreground #abb2bf
+  selection_background #393f4a
+  selection_foreground #abb2bf
+  url_color #98c379
+  cursor #abb2bf
+  
+  # Tabs
+  active_tab_background #282c34
+  active_tab_foreground #abb2bf
+  inactive_tab_background #242b38
+  inactive_tab_foreground #5c6370
+  #tab_bar_background #20232A
+  
+  # normal
+  color0 #20232A
+  color1 #e86671
+  color2 #98c379
+  color3 #e0af68
+  color4 #61afef
+  color5 #c678dd
+  color6 #56b6c2
+  color7 #798294
+  
+  # bright
+  color8 #5c6370
+  color9 #e86671
+  color10 #98c379
+  color11 #e0af68
+  color12 #61afef
+  color13 #c678dd
+  color14 #56b6c2
+  color15 #abb2bf
+  
+  # extended colors
+  color16 #d19a66
+  color17 #f65866
+  

config/kitty/onehalf-dark.conf

@@ -0,0 +1,42 @@
+# Onehalf Colorscheme for Kitty
+# Based on https://github.com/sonph/onehalf
+# By https://github.com/dbinary
+
+foreground            #dcdfe4
+background            #282c34
+selection_foreground  #000000
+selection_background  #FFFACD
+url_color             #0087BD
+
+# black
+# color0   #282c34
+color0   #5d677a
+color8   #5d677a
+
+# red
+color1   #e06c75
+color9   #e06c75
+
+# green
+color2   #98c379
+color10  #98c379
+
+# yellow
+color3   #e5c07b
+color11  #e5c07b
+
+# blue
+color4  #61afef
+color12 #61afef
+
+# magenta
+color5   #c678dd
+color13  #c678dd
+
+# cyan
+color6   #56b6c2
+color14  #56b6c2
+
+# white
+color7   #dcdfe4
+color15  #dcdfe4

config/lazygit/config.yml

@@ -0,0 +1,7 @@
+gui:
+  showFileTree: false
+  showCommandLog: false
+  showIcons: true
+promptToReturnFromSubprocess: false
+# to exit immediately if run outside of the Git repository
+notARepository: 'quit'

config/nvim/README.md

@@ -10,14 +10,11 @@ mv nvim.appimage "$HOME/bin/nvim"
 
 ## Installing configuration
 ```bash
-git clone git@github.com:elitherl/vim-config.git ${XDG_CONFIG_HOME:-$HOME/.config}/nvim
-# or using symlink
-git clone git@github.com:elitherl/vim-config.git /path/to/directory
-ln -s /path/to/directory ${XDG_CONFIG_HOME:-$HOME/.config}/nvim
+ln -s /path/to/config/nvim ${XDG_CONFIG_HOME:-$HOME/.config}/nvim
 ```
 
 ### Install script
-`install.sh` currently handles installing `Packer`, `pynvim`, `pipx` and currently configured language servers with formatters.
+`install.sh` currently handles installing `Packer` and `pynvim`.
 Will also update existing installs if already present.
 
 ### Installing `Packer` plugin manager

install.sh

@@ -0,0 +1,14 @@
+#! /usr/bin/env sh
+# Install various dotfiles into their proper places
+
+# .config files
+CONFIG_DIR="${XDG_CONFIG_HOME:-$HOME/.config}"
+mkdir -p "$CONFIG_DIR"
+
+for FILE in config/*; do
+    FILENAME="$(basename $FILE)"
+    if [ ! -e "$CONFIG_DIR/$FILENAME" ]; then
+        ls -s $(readlink -f "$FILE") "$CONFIG_DIR/$FILENAME"
+    fi
+    echo "$(readlink -f $FILE) -> $CONFIG_DIR/$FILENAME"
+done

templates/crontab

@@ -0,0 +1,30 @@
+# Edit this file to introduce tasks to be run by cron.
+#
+# Each task to run has to be defined through a single line
+# indicating with different fields when the task will be run
+# and what command to run for the task
+#
+# To define the time you can provide concrete values for
+# minute (m), hour (h), day of month (dom), month (mon),
+# and day of week (dow) or use '*' in these fields (for 'any').
+#
+# Notice that tasks will be started based on the cron's system
+# daemon's notion of time and timezones.
+#
+# Output of the crontab jobs (including errors) is sent through
+# email to the user the crontab file belongs to (unless redirected).
+#
+# For example, you can run a backup of all your user accounts
+# at 5 a.m every week with:
+# 0 5 * * 1 tar -zcf /var/backups/home.tgz /home/
+#
+# For more information see the manual pages of crontab(5) and cron(8)
+#
+# Example of job definition:
+# .---------------- minute (0 - 59)
+# |  .------------- hour (0 - 23)
+# |  |  .---------- day of month (1 - 31)
+# |  |  |  .------- month (1 - 12) OR jan,feb,mar,apr ...
+# |  |  |  |  .---- day of week (0 - 6) (Sunday=0 or 7) OR sun,mon,tue,wed,thu,fri,sat
+# |  |  |  |  |
+# *  *  *  *  * user-name  command to be executed

templates/python_package/__init__.py~

@@ -0,0 +1,48 @@
+from typing import Union
+import logging
+
+LOGGING_FORMATTER = logging.Formatter("%(name)s - %(levelname)s - %(message)s")
+
+
+def add_root_logger_handler(
+    logger: logging.Logger,
+    formatter: logging.Formatter = LOGGING_FORMATTER,
+) -> None:
+    """
+    Recursively climb logger parent tree to add handler with given formatter to
+    top level logger.
+    Will raise UserWarning if it reaches RootLogger to prevent session modification
+
+    :param logger: Logger object to find top level parent from
+    :param formatter: Formatter object to describe logging statements
+    """
+    if isinstance(logger.parent, logging.RootLogger):
+        if len(logger.handlers) == 0:
+            handler = logging.StreamHandler()
+            handler.setFormatter(formatter)
+            logger.addHandler(handler)
+    elif isinstance(logger, logging.RootLogger) or logger.parent is None:
+        raise UserWarning(
+            "Failure in add_root_logger_handler, "
+            "protecting root logger from modification"
+        )
+    else:
+        add_root_logger_handler(logger=logger.parent, formatter=formatter)
+
+class AbstractLoggingClass:
+    """
+    Base class to ensure logging is setup
+    """
+
+    def __init__(self, loglevel: Union[int, str] = logging.WARNING) -> None:
+        """
+        Set up logging and fetch class level logger for use by subclasses
+
+        :param loglevel: Verbosity of logging statements
+        """
+        module_logger = logging.getLogger(self.__class__.__module__)
+        add_root_logger_handler(module_logger)
+        self.logger = module_logger.getChild(self.__class__.__name__)
+        if loglevel is not None:
+            self.logger.setLevel(loglevel)
+

templates/python_package/gitignore

@@ -0,0 +1,3 @@
+__pycache__
+*.*~
+*.egg-info

templates/python_package/pre-commit-config.yaml

@@ -0,0 +1,27 @@
+# See https://pre-commit.com for more information
+# See https://pre-commit.com/hooks.html for more hooks
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: stable
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-toml
+      - id: check-added-large-files
+  -   repo: https://github.com/sqlalchemyorg/zimports/
+      rev: stable
+      hooks:
+      - id: zimports
+        name: "Reorganise Import Statements"
+  -   repo: https://github.com/psf/black
+      rev: stable
+      hooks:
+      - id: black
+        name: "Reformat Code Using black"
+  -   repo: https://gitlab.com/pycqa/flake8
+      rev: stable
+      hooks:
+      - id: flake8
+        name: "Check Code Style Using flake8"
+

templates/python_package/pyproject.toml

@@ -0,0 +1,41 @@
+[build-system]
+requires = ["setuptools >= 42", "wheel"]
+build-backend = "setuptools.build_meta"
+
+[project]
+name = "my_package"
+version = "1.0"
+authors = [
+    {name = "Evie Litherland-Smith", email = "evie.litherland-smith@ukaea.uk"}
+]
+requires-python = ">=3.7.1"
+dependencies = [
+    "some_package"
+]
+
+[project.optional-dependencies]
+dev = [
+    "pre-commit",
+    "flake8",
+    "black",
+    "zimports",
+]
+
+[project.scripts]
+script_name = "my_package.foo:bar"
+
+[tool.setuptools.packages.find]
+where = ["src"]  # list of folders that contain the packages (["."] by default)
+include = ["my_package*"]  # package names should match these glob patterns (["*"] by default)
+exclude = ["tests*"]  # exclude packages matching these glob patterns (empty by default)
+namespaces = true  # to disable scanning PEP 420 namespaces (true by default)
+
+[tool.black]
+line-length = 88
+exclude = '''
+/(
+    \.git
+  | \.mypy_cache
+  | venv
+)/
+'''

templates/python_package/pyrightconfig.json

@@ -0,0 +1,5 @@
+{
+    "venvPath": "/path/to/venv/directory/",
+    "venv": "venv",
+    "reportMissingTypeStubs": true
+}

templates/python_package/setup.cfg

@@ -0,0 +1,11 @@
+[flake8]
+max-line-length = 88
+import-order-style = pep8
+exclude = .git/*,__pycache__/*
+
+[pycodestyle]
+max-line-length = 88
+exclude = .git/*,__pycache__/*
+
+[mypy-numpy.*]
+ignore_missing_imports = True

templates/python_package/setup.py

@@ -0,0 +1,9 @@
+#!/usr/bin/env python
+"""
+Basic setup.py to maintain backwards compatability with non-PEP517/PEP518
+compliant projects
+"""
+import setuptools
+
+if __name__ == "__main__":
+    setuptools.setup()

templates/python_package/src/__init__.py

@@ -0,0 +1,26 @@
+from typing import Union
+import logging
+
+if (
+    logging.getLogger(__package__).parent.name == "root"
+    and len(logging.getLogger(__package__).handlers) == 0
+):
+    formatter = logging.Formatter("%(name)s - %(levelname)s - %(message)s")
+    handler = logging.StreamHandler()
+    handler.setFormatter(formatter)
+    logging.getLogger(__package__).addHandler(handler)
+
+
+def set_loglevel(loglevel: Union[str, int]) -> None:
+    """
+    Set global loglevel for pyutils modules
+
+    :param loglevel: logging valid loglevel name or integer
+    :type loglevel: Union[str, int]
+    """
+    try:
+        logging.getLogger(__package__).setLevel(
+            loglevel.upper() if isinstance(loglevel, str) else loglevel
+        )
+    except Exception as e:
+        logging.getLogger(__package__).warning("Setting loglevel failed: {}".format(e))