Add submodule updating to git-sync-all wrapper script

scripts/shell/git-sync-all.sh

@@ -18,7 +18,10 @@ for i in "${!SYNC_DIRS[@]}"; do
     (
         cd "$DIRECTORY" || exit
         git remote set-url origin "$URL"
+        git pull --ff --ff-only
+        git submodule update --remote --recursive
         git-sync -ns
+        git status --porcelain
     )
 done
 
@@ -44,7 +47,7 @@ for i in "${!PULL_DIRS[@]}"; do
         cd "$DIRECTORY" || exit
         if [ "$(git branch --show-current)" = "main" ]; then
             git remote set-url origin "$URL"
-            git pull --ff-only
+            git pull --ff --ff-only
             git push
         else
             echo "Not syncing repo $DIRECTORY on branch $(git branch --show-current)"